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TagScan

Tagscan Front-End Applications

Tagscan Input Form

Background: TagScan allows searching for matches or near-exact matches between oligonucleotide queries of up to 60 bases and sequence databases comprising entire genomes or mRNA reference sequences. The smallest query allowed is 10 nucleotides long.


Target Databases:
Genomes:
Transcriptomes (RefSeq):

Query Input:
Enter one Sequence in text window below (max length 60 nt)

Upload text File containing one query sequence per line


exact       one mismatch       two mismatches      
References:
PMID:17593978
Indexing Strategies for Rapid Searches of Short Words in Genome Sequences
Iseli C, Ambrosini G, Bucher P, and Jongeneel CV.
PLoS ONE. 2007; 2(6): e579.
Questions and comments regarding this method should be sent to: Giovanna Ambrosini;

Bug reports should be sent to: Giovanna Ambrosini;