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Signal Search Analysis Server

Sequence Extraction Tool : Input Form

Background: The programm extracts a set of fixed-length DNA sequences located at the same relative position with respect to a functional site (eg. a transcription start site), which are specified in the input FPS file.
The output is in FASTA format.
Additional parameters, such as the description starting point and length, can be given in order to trasfer some specific fields from the input FP lines to the FASTA header lines.
See the SSA Server User Manual for further detail.

Sequence Input:
Transcription initiation sites:
Translation initiation sites:
Sequence input via server-resident FPS file(s)
Name(s) of FPS file(s) (up to four):
Upload FPS File


Sequence search range :

5' border:       3' border:
Sequence Output :
FASTA header line format :
Starting position of description :
Length of description :
References:
  1. Bucher P, Trifonov EN (1986), Compilation and analysis of eukaryotic POL II promoter sequences. Nucleic Acids Res. 14, 10009-10026
Questions and comments regarding this method should be sent to: Philipp Bucher;

Bug reports should be sent to: Giovanna Ambrosini;