Tagscan Front-End Applications

Tagscan Results

Description: The table below reports all exact or near-exact maches found for the input query sequence tag(s) in all selected genome databases. When sequences with single nucleotide mismatch are found, the mismatched position is highlighted in red, the original nucleotide being displayed in green. Along with the word matches (first column), results also show the mapping to the genomes (or transcriptomes) together with hyperlinks to the ENSEMBL, UCSC, and NCBI Viewers.

View Results in TEXT Format

WORD MATCHES	Species	Chromosomal Coordinates [start..end]	Strand	Links to Genome Browsers
`CCACTCTCTCTTTCCGG`	`Human`	NC_000005.8[149809484..149809500]	-	ENSEMBL View UCSC View NCBI View
`TCACTCTCTCTTTCCGG` `C`	`Human`	NC_000010.9[647139..647155]	+	ENSEMBL View UCSC View NCBI View
`CCCCTCTCTCTTTCCGG` `A`	`Human`	NC_000014.7[72345197..72345213]	-	ENSEMBL View UCSC View NCBI View
`CCTCTCTCTCTTTCCGG` `A`	`Human`	NC_000010.9[72392122..72392138]	-	ENSEMBL View UCSC View NCBI View
`CCACGCTCTCTTTCCGG` `T`	`Human`	NC_000012.10[5597201..5597217]	+	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCATTCCGG` `T`	`Human`	NC_000009.10[78984529..78984545]	+	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTATCCGG` `T`	`Human`	NC_000012.10[19242567..19242583]	+	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTGTCCGG` `T`	`Human`	NC_000003.10[5348063..5348079]	-	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCTGG` `C`	`Human`	NC_000023.9[48555989..48556005]	+	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCTGG` `C`	`Human`	NC_000002.10[84849757..84849773]	-	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCTGG` `C`	`Human`	NC_000009.10[27874758..27874774]	-	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCTGG` `C`	`Human`	NC_000010.9[132869470..132869486]	-	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCCAG` `G`	`Human`	NC_000008.9[114458032..114458048]	+	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCCAG` `G`	`Human`	NC_000004.10[109041131..109041147]	-	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCCAG` `G`	`Human`	NC_000019.8[40894359..40894375]	-	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCCCG` `G`	`Human`	NC_000002.10[139899168..139899184]	+	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCCTG` `G`	`Human`	NC_000001.9[55789307..55789323]	-	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCCTG` `G`	`Human`	NC_000005.8[41537950..41537966]	-	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCCTG` `G`	`Human`	NC_000009.10[72019852..72019868]	-	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCCTG` `G`	`Human`	NC_000019.8[43035063..43035079]	-	ENSEMBL View UCSC View NCBI View
`CCTCTCTCTCTTTCCGG` `A`	`Mouse`	NC_000086.6[56506155..56506171]	+	ENSEMBL View UCSC View NCBI View
`CCTCTCTCTCTTTCCGG` `A`	`Mouse`	NC_000068.6[71942938..71942954]	-	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCCTTCCGG` `T`	`Mouse`	NC_000073.5[5435668..5435684]	+	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTCCCGG` `T`	`Mouse`	NC_000086.6[98830629..98830645]	+	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCAGG` `C`	`Mouse`	NC_000077.5[24057784..24057800]	-	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCAGG` `C`	`Mouse`	NC_000082.5[92850804..92850820]	-	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCTGG` `C`	`Mouse`	NC_000073.5[51473564..51473580]	+	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCTGG` `C`	`Mouse`	NC_000075.5[12839311..12839327]	+	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCTGG` `C`	`Mouse`	NC_000080.5[40787314..40787330]	+	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCTGG` `C`	`Mouse`	NC_000070.5[11032043..11032059]	-	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCTGG` `C`	`Mouse`	NC_000077.5[5944027..5944043]	-	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCTGG` `C`	`Mouse`	NC_000082.5[97242513..97242529]	-	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCCAG` `G`	`Mouse`	NC_000070.5[123307490..123307506]	+	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCCAG` `G`	`Mouse`	NC_000068.6[101294455..101294471]	-	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCCAG` `G`	`Mouse`	NC_000082.5[27976488..27976504]	-	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCCAG` `G`	`Mouse`	NC_000086.6[20515696..20515712]	-	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCCTG` `G`	`Mouse`	NC_000075.5[35041665..35041681]	-	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCCTG` `G`	`Mouse`	NC_000075.5[85162437..85162453]	-	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCCTG` `G`	`Mouse`	NC_000086.6[40680179..40680195]	-	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCCTG` `G`	`Mouse`	NC_000086.6[87735423..87735439]	-	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCCGA` `G`	`Honey Bee`	NC_007076.2[12666768..12666784]	+	N/A N/A NCBI View
`CCACTCTCTCTTTCCGC` `G`	`Honey Bee`	NC_007071.2[12402346..12402362]	-	N/A N/A NCBI View
`CCACTCTCTCTTTCCGG`	`Chimpanzee`	NC_006472.2[152419038..152419054]	-	ENSEMBL View UCSC View NCBI View
`CCCCTCTCTCTTTCCGG` `A`	`Chimpanzee`	NC_006481.2[72504070..72504086]	-	ENSEMBL View UCSC View NCBI View
`CCAGTCTCTCTTTCCGG` `C`	`Chimpanzee`	NC_006469.2[9882327..9882343]	-	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCATTCCGG` `T`	`Chimpanzee`	NC_006476.2[76061293..76061309]	+	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTGTCCGG` `T`	`Chimpanzee`	NC_006490.2[5473988..5474004]	-	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCTGG` `C`	`Chimpanzee`	NC_006491.2[48985717..48985733]	+	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCTGG` `C`	`Chimpanzee`	NC_006469.2[86667902..86667918]	-	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCTGG` `C`	`Chimpanzee`	NC_006476.2[28474585..28474601]	-	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCTGG` `C`	`Chimpanzee`	NC_006477.2[132380590..132380606]	-	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCCAG` `G`	`Chimpanzee`	NC_006472.2[150495010..150495026]	+	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCCAG` `G`	`Chimpanzee`	NC_006471.2[111311995..111312011]	-	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCCAG` `G`	`Chimpanzee`	NC_006486.2[41214273..41214289]	-	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCCTG` `G`	`Chimpanzee`	NC_006472.2[74092655..74092671]	+	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCCTG` `G`	`Chimpanzee`	NC_006468.2[56544743..56544759]	-	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCCTG` `G`	`Chimpanzee`	NC_006478.2[6614285..6614301]	-	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCCTG` `G`	`Chimpanzee`	NC_006486.2[43394937..43394953]	-	ENSEMBL View UCSC View NCBI View
`CCACTCTCTCTTTCCGA` `G`	`Chimpanzee`	NC_006479.2[15981845..15981861]	-	ENSEMBL View UCSC View NCBI View